Eukaryotic DNA damage responses

Prof Noel Lowndes

  • email: noel.lowndes@nuigalway.ie
  • phone: +353 91 49 2415
  • post: Department of Biochemistry, NUI Galway, Distillery Rd, Galway, Ireland

Research Interests

  • The function and regulation of the checkpoint mediators, Rad9, 53BP1, BRCA1 and MDC1
  • The function and regulation of the PIK kinases, Mec1, Tel1, ATR and ATM
  • Epigenetic regulation of the DNA damage response

Research Overview


Fig 1: Group photo

Fig 2: Colocalisation of Rad9 and Rad52 in S. cerevisiae

DNA damage results in mutations, which in turn can activate proto-oncogenes or inactivate tumour suppressors. The balance of activity of these genes determines the cancerous state. The DNA Damage Response (DDR) is a complex, interacting network of biochemical pathways that ultimately prevents the accumulation of cells with mutations. This response constantly surveys the genome for damage that threatens its stability.

Once structural alterations have been sensed there are five broad biological outcomes: 1) DNA repair; 2) transient delays to cell cycle progression (termed checkpoints); 3) a transcriptional programme; 4) programmed cell death (apoptosis) and 5) senescence. Failure to properly integrate these biological responses results in genome instability, the principal hallmark of cancer.

We investigate the mechanisms of sensing and responding to DNA damage Using yeast and, more recently, DT40 chicken cells as our principal model systems. Our research is a balance of hypothesis and discovery led research using both genetic and biochemical approaches to functionally and structurally analyse the role of checkpoint mediators, the central protein kinase regulators and the epigenetic regulation of the DDR.

Key Publications

  • Bree RT, Lai XY, Canavan LE, Lowndes NF, Comparisons between DT40 wildtype and DT40-Cre1 cells as suitable model systems for studying the DNA damage response. Cell Cycle 6: 2310-2313 (2007)
  • Toh GW, O'Shaughnessy AM, Jimeno S, Dobbie IM, Grenon M, Maffini S, O'Rorke A, Lowndes NF, Histone H2A phosphorylation and H3 methylation are required for a novel Rad9 DSB repair function following checkpoint activation. DNA Repair (Amst) 5: 693-703 (2006)
  • Gilbert CS, Green CM, Lowndes NF, Budding yeast Rad9 is an ATP-dependent Rad53 activating machine. Mol Cell 8: 129-136 (2001)